PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000875.1.g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 881aa    MW: 99726.2 Da    PI: 7.5943
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000875.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.72.1e-1459194290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................. 47 
                                     fY  Y+   GF++rk+k   +++++ i++r +vCs+eg+r++ k++                                 
  FANhyb_rscf00000875.1.g00004.1  59 FYLYYSIAKGFNMRKRKLDWNSKKTMIIRRVLVCSREGERRNPKESnvceedddsaledglfhknvkgrkdkalrisvv 137
                                     9********************99******************999999******************************** PP

                            FAR1  48 .............tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                                  ++ +++tr  +r++C a+++v+ ++ +g +  +++ +eHnH+l+
  FANhyb_rscf00000875.1.g00004.1 138 ndsdsscsgkknaKTLTSKTRRLSRVHCGAQFTVNFDSeRGGFAASSFTTEHNHPLT 194
                                     ********99988888899*****************9999***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-1259194IPR004330FAR1 DNA binding domain
PfamPF105512.7E-31316410IPR018289MULE transposase domain
PROSITE profilePS5096610.126595633IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-6608635IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDSSGIGSDD GTELSQSIDG SHWSRNDQCT MFNGKPYRDL TLDDLKDVVF KSVAEADTFY  60
LYYSIAKGFN MRKRKLDWNS KKTMIIRRVL VCSREGERRN PKESNVCEED DDSALEDGLF  120
HKNVKGRKDK ALRISVVNDS DSSCSGKKNA KTLTSKTRRL SRVHCGAQFT VNFDSERGGF  180
AASSFTTEHN HPLTQRAHTP FMKKNRGLKE HDMAQVDSLR KVSVGTSCAY EFLVHQAGGH  240
EFVGFTERDL YNRVQRENSK LMIDGDAQCC ITWMNMKATR DPNFYSVFSV DEKGRLANMF  300
WRDGQSYTDY CAYGDVLVFD STYKTNMYGK PLVVFVGSNN HRATVMFGCA LLVDETEETY  360
NWVLTAFLAS MKQKKPVSVI TDSDEAMRKA LDNVMPEARQ RLCAWHVGKN AVSHLRDANT  420
RADFFHHIFA GLTIEEWELS WEYFVAMNRL EDNSWINGMY NKRHRWAEAF FRDEFYGGIS  480
STQRCEGMHR ILKVGIGSCM TMSEMMARME KSVARLRNRG LYDDYMSDQF SPVLKTHMLE  540
LEEDIGRVFT HDIYLLMRDQ IFFEKKFSVA GRVVNEESGA SAVRITQYGK PGRIWNVDFQ  600
PDMTNPTFTC SCKLFESDGI PCCHIFCVMK AENMTKLPPS LVKKRWTKEG ALTRKSESTV  660
DGKSVQLARY GELMSMCARI CHIASSSEEG YDGVKELLSR LTIESRNLPQ PAETDPKDPE  720
QDIDSTTGLH RNVIRDPVPC RSKGTKKDSG SGKGSKKKKT SKCSRCKQYG HNKSTCEKHG  780
MEGKKNVSIK SDTDDMGPQS SSIEGDLSTG ETSDMSVSSD DDVGDVETQK NCDGKLFHHL  840
EEARTFEFVS GEGNTRDASS RGSRGGEGGY FRHFRPFTES A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294380.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461031.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461032.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1389628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-78FAR1-related sequence 5